UBXD2

Protein-coding gene in the species Homo sapiens

UBXN4
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

2KXJ

Identifiers
AliasesUBXN4, UBXD2, UBXDC1, erasin, UBX domain protein 4
External IDsOMIM: 611216; MGI: 1915062; HomoloGene: 40962; GeneCards: UBXN4; OMA:UBXN4 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for UBXN4
Genomic location for UBXN4
Band2q21.3Start135,741,734 bp[1]
End135,785,056 bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for UBXN4
Genomic location for UBXN4
Band1|1 E3Start128,171,701 bp[2]
End128,207,115 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sperm

  • pylorus

  • cardia

  • secondary oocyte

  • optic nerve

  • seminal vesicula

  • body of pancreas

  • nipple

  • endometrium

  • corpus epididymis
Top expressed in
  • lacrimal gland

  • Rostral migratory stream

  • left lobe of liver

  • tail of embryo

  • supraoptic nucleus

  • prostate

  • salivary gland

  • lobe of prostate

  • seminal vesicula

  • retinal pigment epithelium
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
  • protein binding
Cellular component
  • nuclear envelope
  • endoplasmic reticulum
  • endoplasmic reticulum membrane
  • nucleus
  • membrane
  • cytosol
Biological process
  • response to unfolded protein
  • ubiquitin-dependent ERAD pathway
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23190

67812

Ensembl

ENSG00000144224

ENSMUSG00000026353

UniProt

Q92575

Q8VCH8

RefSeq (mRNA)

NM_014607

NM_026390
NM_001356529

RefSeq (protein)

NP_055422

NP_080666
NP_001343458

Location (UCSC)Chr 2: 135.74 – 135.79 MbChr 1: 128.17 – 128.21 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

UBX domain-containing protein 4 is a protein that in humans is encoded by the UBXN4 gene.[5][6]


References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000144224 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000026353 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Liang J, Yin C, Doong H, Fang S, Peterhoff C, Nixon RA, Monteiro MJ (Sep 2006). "Characterization of erasin (UBXD2): a new ER protein that promotes ER-associated protein degradation". J Cell Sci. 119 (Pt 19): 4011–24. doi:10.1242/jcs.03163. PMID 16968747. S2CID 1194226.
  6. ^ "Entrez Gene: UBXD2 UBX domain containing 2".

Further reading

  • Nagase T, Seki N, Ishikawa K, et al. (1997). "Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain". DNA Res. 3 (5): 321–9, 341–54. CiteSeerX 10.1.1.319.3770. doi:10.1093/dnares/3.5.321. PMID 9039502.
  • Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Suzuki Y, Yamashita R, Shirota M, et al. (2004). "Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions". Genome Res. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC 515316. PMID 15342556.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
  • Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.
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  • 2dzk: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
    2dzk: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2


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