FBXO6

Protein-coding gene in the species Homo sapiens

FBXO6
Identifiers
AliasesFBXO6, FBG2, FBS2, FBX6, Fbx6b, F-box protein 6
External IDsOMIM: 605647; MGI: 1354743; HomoloGene: 9274; GeneCards: FBXO6; OMA:FBXO6 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for FBXO6
Genomic location for FBXO6
Band1p36.22Start11,664,200 bp[1]
End11,674,354 bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]
Chromosome 4 (mouse)
Genomic location for FBXO6
Genomic location for FBXO6
Band4 E2|4 78.67 cMStart148,230,173 bp[2]
End148,236,597 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • granulocyte

  • monocyte

  • muscle of thigh

  • gastrocnemius muscle

  • bronchial epithelial cell

  • blood

  • right lobe of liver

  • olfactory zone of nasal mucosa

  • mucosa of ileum

  • right adrenal gland
Top expressed in
  • urinary bladder

  • muscle of thigh

  • adrenal gland

  • muscle tissue

  • skeletal muscle tissue

  • quadriceps femoris muscle

  • placenta

  • white adipose tissue

  • lip

  • right kidney
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • ubiquitin protein ligase activity
  • carbohydrate binding
  • ubiquitin-protein transferase activity
  • protein binding
Cellular component
  • cytoplasm
  • SCF ubiquitin ligase complex
  • endoplasmic reticulum quality control compartment
  • cytosol
Biological process
  • cellular response to DNA damage stimulus
  • DNA damage checkpoint signaling
  • SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
  • response to unfolded protein
  • DNA repair
  • protein ubiquitination
  • proteolysis
  • ubiquitin-dependent ERAD pathway
  • glycoprotein catabolic process
  • protein polyubiquitination
  • post-translational protein modification
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

26270

50762

Ensembl

ENSG00000116663

ENSMUSG00000055401

UniProt

Q9NRD1

Q9QZN4

RefSeq (mRNA)

NM_018438

NM_001163704
NM_001163705
NM_001163706
NM_001163707
NM_015797

RefSeq (protein)

NP_060908

NP_001157176
NP_001157177
NP_001157178
NP_001157179
NP_056612

Location (UCSC)Chr 1: 11.66 – 11.67 MbChr 4: 148.23 – 148.24 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

F-box only protein 6 is a protein that in humans is encoded by the FBXO6 gene.[5][6][7]

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of the ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbxs class, and its C-terminal region is highly similar to that of rat NFB42 (neural F Box 42 kDa) which may be involved in the control of the cell cycle.[7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000116663 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000055401 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Cenciarelli C, Chiaur DS, Guardavaccaro D, Parks W, Vidal M, Pagano M (Dec 1999). "Identification of a family of human F-box proteins". Curr Biol. 9 (20): 1177–9. Bibcode:1999CBio....9.1177C. doi:10.1016/S0960-9822(00)80020-2. PMID 10531035. S2CID 7467493.
  6. ^ Ilyin GP, Rialland M, Pigeon C, Guguen-Guillouzo C (Nov 2000). "cDNA cloning and expression analysis of new members of the mammalian F-box protein family". Genomics. 67 (1): 40–7. doi:10.1006/geno.2000.6211. PMID 10945468.
  7. ^ a b "Entrez Gene: FBXO6 F-box protein 6".

Further reading

  • Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315–21. Bibcode:2006Natur.441..315G. doi:10.1038/nature04727. PMID 16710414.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Yoshida Y, Tokunaga F, Chiba T, et al. (2003). "Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains". J. Biol. Chem. 278 (44): 43877–84. doi:10.1074/jbc.M304157200. PMID 12939278.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ilyin GP, Sérandour AL, Pigeon C, et al. (2003). "A new subfamily of structurally related human F-box proteins". Gene. 296 (1–2): 11–20. doi:10.1016/S0378-1119(02)00867-3. PMID 12383498.
  • Winston JT, Koepp DM, Zhu C, et al. (1999). "A family of mammalian F-box proteins". Curr. Biol. 9 (20): 1180–2. Bibcode:1999CBio....9.1180W. doi:10.1016/S0960-9822(00)80021-4. PMID 10531037. S2CID 14341845.