CLDND1

Protein-coding gene in the species Homo sapiens
CLDND1
Identifiers
AliasesCLDND1, C3orf4, GENX-3745, claudin domain containing 1, Z38
External IDsMGI: 2447860; HomoloGene: 10534; GeneCards: CLDND1; OMA:CLDND1 - orthologs
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for CLDND1
Genomic location for CLDND1
Band3q11.2|3q12.1Start98,497,912 bp[1]
End98,523,066 bp[1]
Gene location (Mouse)
Chromosome 16 (mouse)
Chr.Chromosome 16 (mouse)[2]
Chromosome 16 (mouse)
Genomic location for CLDND1
Genomic location for CLDND1
Band16|16 C1.2Start58,548,273 bp[2]
End58,554,614 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • corpus callosum

  • C1 segment

  • middle frontal gyrus

  • inferior ganglion of vagus nerve

  • globus pallidus

  • internal globus pallidus

  • pons

  • subthalamic nucleus

  • external globus pallidus

  • pars reticulata
Top expressed in
  • Rostral migratory stream

  • epithelium of stomach

  • neural layer of retina

  • spermatid

  • genital tubercle

  • sternocleidomastoid muscle

  • triceps brachii muscle

  • human fetus

  • pyloric antrum

  • medial ganglionic eminence
More reference expression data
BioGPS
More reference expression data
Orthologs
SpeciesHumanMouse
Entrez

56650

224250

Ensembl

ENSG00000080822

ENSMUSG00000022744

UniProt

Q9NY35

Q9CQX5

RefSeq (mRNA)
NM_019895
NM_001040181
NM_001040182
NM_001040183
NM_001040184

NM_001040199
NM_001040200

NM_001252450
NM_001252451
NM_171826
NM_001356488

RefSeq (protein)
NP_001035271
NP_001035272
NP_001035273
NP_001035289
NP_001035290

NP_063948

NP_001239379
NP_001239380
NP_741968
NP_001343417

Location (UCSC)Chr 3: 98.5 – 98.52 MbChr 16: 58.55 – 58.55 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Claudin domain-containing protein 1 is a protein that in humans is encoded by the CLDND1 gene.[5]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000080822 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000022744 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: CLDND1 claudin domain containing 1".

Further reading

  • Liu Y, Sun W, Zhang K, et al. (2007). "Identification of genes differentially expressed in human primary lung squamous cell carcinoma". Lung Cancer. 56 (3): 307–17. doi:10.1016/j.lungcan.2007.01.016. PMID 17316888.
  • Otsuki T, Ota T, Nishikawa T, et al. (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Res. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Clark HF, Gurney AL, Abaya E, et al. (2003). "The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Fayein NA, Stankoff B, Auffray C, Devignes MD (2002). "Characterization of tissue expression and full-length coding sequence of a novel human gene mapping at 3q12.1 and transcribed in oligodendrocytes". Gene. 289 (1–2): 119–29. doi:10.1016/S0378-1119(02)00507-3. PMID 12036590.
  • Zhang QH, Ye M, Wu XY, et al. (2001). "Cloning and Functional Analysis of cDNAs with Open Reading Frames for 300 Previously Undefined Genes Expressed in CD34+ Hematopoietic Stem/Progenitor Cells". Genome Res. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC 310934. PMID 11042152.
  • Piétu G, Mariage-Samson R, Fayein NA, et al. (1999). "The Genexpress IMAGE Knowledge Base of the Human Brain Transcriptome: A Prototype Integrated Resource for Functional and Computational Genomics". Genome Res. 9 (2): 195–209. doi:10.1101/gr.9.2.195. PMC 310711. PMID 10022985.


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